Biofluorimetry Lab
Dipartimento di Fisiopatologia Medica
University of Rome 'La Sapienza'
page created and maintained by Leopoldo Silvestroni & Simonetta Palleschi
clicca qui > DICHIARAZIONE DEI REDDITI 2006 < clicca quilast update March 14, 2006
|
dear Guest, this large site's area has been updated and renewed in depth give a look at the newborn pages:
|
Biochemistry |
|
|
|
|
Biology |
|
|
|
|
Biophysics |
|
Biochemistry |
..
Journal
Browser Transduction
|
accesses since August 17, 2000:
(see also our spectroscopy page)
Animated Electromagnetism
Animated Physics (interactive esperiments)
Atomic Physics:Infrared Radiation and Degrees of Freedom
Quantum Numbers and the Periodic Table
Spectral Sensitivity of the Eye
Atoms review
Bar-psi-Kpa-atm conversionBinary phase equilibria (1)(2)
Binary prefixes
Bioelectricity
Bioenergetics (1)(2)Biomagnetism and Bio-electromagnetism (1)(2)
Rebuilding the Body with Bionics
Silicon Cochlea - From Biology to Bionics
Trade Secret of Sticky Spiders Revealed
Two Jointed Robot Arm with Elastic Drives and Active Oscillation Damping
Conformation space & energy function of proteins
Constants (1)
Conversion of UnitsOscilloscope: introduction & digital oscilloscope
Pulse counting (photon counting)
Electricity:
Solid State and Semiconductors
Electrodynamic (van der Waals) forces
Electromagnetic radiation
Electromagnetic waves and Maxwell's equationsElectromagnetism
Electronics tutorialEnergy transduction in membranes
Entropy and the laws of thermodynamics
Entropy
Fluids:Fundamental Physical Constants
Hydrophobicity scale of amino acids
History (1) (2)Infrared Spectra
Infrared Spectra (Introduction to)Infrared Spectroscopy - Basic
Interactive physics textbookInteractive simulation & VRML gallery
International System of Units
Introductory Physics NotesIon channels and excitability simulations
Laser Tutorials
Lasers
Laws and rules of physicsLipid Thermotropic Phase Transitions Database
Magnetism:Mass Spectroscopy, Current Loops and Spin
Mathematical Models in Biophysics (PDF)
Mechanics - 1:Statics and Mechanical Equilibrium
Mechanics - 2:
Membrane fluidity
Membrane permeabilityMembrane potential (Nernst) (slides) (Gouy-Chapman equation)
Membrane Protein Explorer (by hydropathy plot)
Membrane Protein Folding and Stability (Thermodynamics)
Membrane protein-lipid interaction energeticsMolecular Dynamics Simulations of Lipid Bilayers
Molecular Dynamics Simulations of Membranes
Molecular structure calculation (with 3D images)Nuclear Physics:
Biological Effects of Radiation
Nuclear Decay and Radioactive Series
Optical tweezers: measuring piconewton forces
Optics & Photonics Resources, References & TutorialsPolarization and Birefringence
Particle-Surface Resources on the Internet (180 links!)
Permeation as a diffusion process
Phase diagrams (1)(2) (3, glossary of terms)
Phase equilibria (1)(2)(3)(4)(5)(6)
Protein-detergent interactions
Photobiology onlinePhotons & Biophotons:
Biophoton emission from the hands (PDF)
Electromagnetic self-field theory: its application to hydrogen atom
Spectroscopy of the EM field: a predicted photonic chemistry
Physical Constants (1) (2)
Physical Reference Data (NIST)
Physics (1) (2)
Physics Calculators
Physics WebProtein folding - unraveling the mystery
Quantum biophysics in living organisms
Quantum Mechanical Barrier Penetration
Quantum Mechanics (1)
Quantum Physics
Radioactive decay calculator (1) (2)Radionuclide Half-Life Measurements
Raman Scattering (1) (2)
Raman spectra of carbohydrates
Raman spectroscopy of single molecules (SERS)SI prefixes & units
Signal conversion: electrical to chemical
Single Molecule MicrospectroscopySpectroscopy
Spectrometry
Statistical MechanicsStatistical Thermodynamics Computational Site
Structural biophysics web resources
Temperature conversion calculator
Thermodynamic data (Cp, entropy, and enthalpy of formation) for over 5000 compounds
Thermodynamic Equilibrium (experiments, Java)
Thermodynamics:Photosynthesis and Entropy Generation
Thermodynamics of energy transduction in biological membranes
Thermophysical Properties of Fluid SystemsVapor-liquid equilibria for distillation
Vapor pressure, boiling and freezing temperatures of a solution
Vibration Modes (schemes & AVI files)
Vibrational spectrum of a linear molecule (pdf file)
Waves - 1:Superposition : Fourier Principles/Complex Waves
Waves - 2:
Wavenumber Tables for Calibration of Infrared Spectrometers
What is biophysics?
X-ray and Gamma-ray Data
X-ray diffraction
X-ray emission lines
X-ray interactions with matter
X-ray www server
see also the new page
Agricultural chemistry
(1)
(2)
Analytical Chemistry &
Instrumentation
Atomic
orbitals (1)
(2)
Atomic Spectra
Database
(NIST)
Atomic Spectroscopic
Data
Atomic Structure
(1)
(2)
Basic Math concepts
Biochemistry/Chemistry
Boiling
point
Bond
Energy
Chemical
bonding
Chemical
bonds
(peptide bond)
(1)
(2)
Chemical
bonds and groups (1)
(2)
Chemical bonds and molecular
structures
Chemical bonds modeled with a mathematical
function
Chemical elements sorted by:
Melting Point (Freezing Point)
Chemical sensors
Chemistry & Environmental Dictionary
Chemistry Calculator
Chemistry
Databases
(1)
(2)
Chemical Forums
Chemistry Internet
Index
Chemistry Lab General
Procedures
Chemistry resources
(1)
(2)
Chemistry sites
(1)
(2)
Clinical chemistry
sites
Composition of
matter
Computational
chemistry
Constants
and
Equations
Conversion of
Units
Cosmochemistry
Covalent and ionic
bond
Crystallographic data center
(Cambridge)
Education links
Electroanalytical
Chemistry
Electrochemistry
Electronic Energy Levels Searches
Electronic structure of
molecules
Environmental
chemistry (1)
(2)
Equation balancer
Equations, Formulas &
Stoichiometry
Equilibrium
(1)
(2)
(3)
Fourier Transform
Fuel chemistry (1)
(2)
Gases
(molecular
equilibrium)
Gaussian distribution (pdf
file)
Geochemistry
Sites
Infrared Spectra (Introduction
to)
Ionization
Data
IUPAC
(Nomenclatures/Recommendations)
Mass Spectral Database
(1) (2) (3) (4)
Matrices (for physical chemistry)
pdf file
Maxwell-Boltzman distribution (pdf
file)
Medicinal chemistry
Molarity, Molality and Normality
Molecular Mass
calculator
Molecular orbitals
Nuclear & Radiochemistry
Organic chemistry (introduction to)
Organic nomenclature
Organic Question
Bank
Organometallic Thermochemistry Database
Periodic law
Periodic Table
(huge web
repository)
pH calculation &
Protons
Photochemistry
Physical Chemistry
Sample Preparation & Microwave
Chemistry
SI units
Solid state chemistry (1)
(2)
Solutions
(1)
(2)
Photochemistry
Database
Radiochemistry
History
Spectra integrated database for organic
compounds
Spectra
libraries
Standard Reduction Potentials (1)
(2)
(3)
Surface analysis
Surface Chemistry
Surface tension
Thermochemistry
(1) (2) (3)
Thermodynamics and Solution Behavior of Macromolecules
Thermodynamics
Vapor pressure (1) (2)
Vapor pressure Data
(organic compounds)
Water chemical properties (part
1
– part
2)
Water and
Ice
Weak non-covalent chemical bonds (part
1
– part
2)
Amino Acid Repository (with biophysical properties)
Amino Acid Atlas of Side-Chain and Main-Chain Hydrogen Bonding
Amino acids in proteins (part 1 – part 2)
Amino Acids Hydrophobicity Table (1) (2)
Biological Macromolecule Crystallization Database
Cytric acid cycle (part 1 – part 2)
Electron transport pathways & inhibition
Excitatory Amino Acid transporters inhibitors
Fatty acid (also synthesis and metabolism)
Fatty acids and other lipids (part 1 – part 2)
Glycolysis (part 1 - part 2) (3) (4)
Hormones (scheme list and effects)
Matrix Metalloproteinases (MMPs)
Membrane Protein structure prediction
Metabolic Pathways in Biochemistry
Nitric oxide donors/precursors
Nomenclature and Symbolism for Amino Acids and Peptides
Nucleic acid binding proteins (PDB files)
Nucleic acid sequence databases
Oxidative phosphorilation (1) (2)
Protein Side-Chain Interactions
Protein Structure and Behaviour: principles
Quaternary structure of proteins
Secondary structure of proteins
Sugars in cells (part 1 – part 2)
Tertiary structure of proteins
Action Potential
Action potential propagation
Activin / InhibinAdaptin
Adhesion Molecules (1) (2) (3)
Angiogenin
Annexin V
Apoptosis (1) (2)
Apoptosis Interest Group at NIH
AutosomeCalcium Signalling. A tale for all seasons (PNAS, 2002 - PDF)
Cell membraneCell membrane (drawing)
Cell cycle (scheme diagram)
Cell Organelles
Cell signalling pathway finder
Cells
Cellular & Molecular Biology
Cellular energy metabolism (scheme)Contraction regulatory proteins
Cytoskeletal filamentsCytskeletal system
Cytoskeleton
Developmental mechanismsEpithelia and Junctional complexes
Exocytosis
Gametogenesis
GFP fluorescence (molecular structure)Golgi complex
Green Fluorescent Proteins
Glial Cell Line-derived Neurotrophic Factor (GDNF)Insertion of proteins into membranes (PPT slides)
Intermediate filaments (PPT slides)
Intercellular Adhesion Molecule-3/CD50 (ICAM-3)Internalization
Ion channels linksIntracellular membranes & Cytosol
Ion Channels, Transmitters, Receptors & DiseaseLysososmes
Macrophage Stimulating Protein (MSP)
Meiosis (1) (2)Membrane Channels genes and gene products
Membrane glycolipids
Membrane lipidsMembrane phospholipids
Membrane potential (see also in Biophysics & Physics in this page)Membrane structure: freeze-fracture
Membrane structure and function
Membrane studies by cytochemistry
Membranes (PPT slides)
Microtubule Associated Proteins
Microtubules and Cilia (PPT slides)
Mitochondrial Architecture (PPT slides)
Mitosis
Mitosis labelled diagram
Mitosis & Meiosis (comparison)Nucleolar Structure And Function
Nucleosome
Nucleus (1) (2)Receptor Mediated Endocytosis (PPT slides)
Secretion by electrochemical methods (PDF)
Smooth endoplamis reticulum
Smooth Muscle: Histology and Function
Sorting signals and patches (PPT slides)
Table of Standard Genetic CodeVoltage gated K+ Channels (PDF)
Voltage gated ion channels:
Voltage-gated sodium channels
Voltage-gated calcium channels
Potassium channels
Cyclic nucleotide-modulated channels
Transient receptor potential channels
Acetylcholine Receptor, Muscarinic (1) (2) (3) (4) (5)
Acetylcholine receptor modulators
Adenylyl/guanylyl cyclase modulators
Adrenoceptor pharmacology (PDF)
Aryl hydrocarbon receptor (1) (2)
Aryl hydrocarbon receptor signaling (PDF)
Aryl hydrocarbon receptor-mediated cell cycle control
Cannabionoid receptor signaling (PDF)
Cytokine receptors (1) (2)
Cytokine Signaling Pathway Database
Dopamine receptors (1,PDF) (2) (3,PDF)
Eph Receptors & Ligands (1) (2)
Fitting Models to Biological Data using Linear and Nonlinear Regression
G protein coupled receptors (1) (2)
G proteins (1) (2)
Gaba Receptors (1) (2, with animations)
Inactivation of neurotransmitter at chemical synapses
Kinase signalling cascade Genes
Levels of organization in the nervous system
Ligand Gated Ion Channel database
Map Kinase Pathways (1) (2 PDF) (3) (4 PDF) (5) (6)
Metabotropic Glutamate Receptors (PDF)
Nerve impulse (part 1) (part 2)
Neural Basis of Complex Behavior
Neurotransmission Biochemistry
Neurotransmitters/neuromodulators
Nicotinic neuronal receptors (PDF)
Nucleotide and Nucleoside Receptors (PDF)
PhosphoBase - A database of phosphorylation sites
Propagation of the Action Potential
Protein kinases activators & inhibitors
Receptor Binding: Basic Principles and Techniques (PDF)
5-Hydroxytryptamine receptors
Acetylcholine receptors (muscarinic)
Adenosine receptors
Adrenoceptors
Angiotensin receptors
Cannabinoid receptors
Chemokine receptors
Cholecystokinin
receptors
Dopamine receptors
Endothelin receptors
GABAB receptors
Glucagon receptor
family
Histamine receptors
Leukotriene receptors
Melanocortin receptor
family
Melatonin receptors
Metabotropic glutamate
receptors
Neuromedin U Receptors
Neuropeptide Y
receptor family
Opioid receptors
P2X receptors
P2Y receptors
Prostanoid receptors
Somatostatin receptors
Urotensin receptors
VIP and PACAP receptors
Receptor Tyrosine Kinases database
Reflexes and pattern generation
Sensory
Receptors and Phototransduction in Rods
Serotonin
Receptors (PDF)
Synaptic Transmission and Neural Integration
Synaptic transmission with animations
Terms & symbols in receptor pharmacology (PDF)
Theory And Practice Of Receptor Characterization And Drug Analysis
Voltage gated ion channels:
Voltage-gated calcium channels
Potassium channels
Cyclic nucleotide-modulated channels
Transient receptor potential channels
see also the new page
Accuracy & Precision
Biocomputing (links)
Bioinformatics & Computational Biology
Coordinate SystemsConstants, Units & Uncertainty
CrystallographyData acquisition (Introduction)
Data Analysis/Modeling
Data rejection
Gaussian distribution (pdf file)Fitting Models to Biological Data using Linear and Nonlinear Regression (pdf)
Graphical Data Analysis
Idealization, Approximation and Precision
Lin<>Log
conversion
Linear
and
non-linear compartmental
models
Mathematical
background
Mathematical
Constants
Mathematics (links)
Mathematics of
NMR
Mean versus median (pdf
file)
Non-linear
regression
Numerical Solution
of Second Order Differential Equations (pdf file)
Problem Solving
Propagation of error (pdf file)
Receptor Binding: Basic Principles and Techniques
Statistics
Uncertainty in
measurements
(NIST guidelines, 1994 ed,
pdf)
Biocomputing & Bioinformatics (1) (2)
Chime
Membrane Protein Explorer (by hydropathy plot)
Molecular Drawing and Modeling
Helical Wheel (peptide sequence as a helical wheel)
Hydrophobicity Plotter (hydrophillic and hydrophobic regions)
Isoelectric (charge as a function of pH)
Isotopident (isotopic distribution)
Moment (helical hydrophobicity)
PAWS (interpretation of mass) spectra
PepSeq (peptide sequencing techniques)
Peptide Builder Lite (text representations for peptides and proteins)
Peptide Companion (HPLC behavior of peptides, enzymatic or chemical degradation, conformation predictions...)
PeptideMap (peptide map as a function of proteolytic digestion)
Peptide Property Calculator (molecular weight, titration curve, iso-electric point, hydrophilicity/hydrophobicity)
Adenovirus
Artificial
Intelligence
Atomic
force microscopy (has its own page)
Behavior
Biochemnet
Bone
Morphogenetic Proteins (PDF)
BOOKS
on
Science and
Nature
(from
Amazon)
Brain (comprehensive
introduction)
Carcinogen potency
database
Central Dogma of Molecular
Biology
Crossing-over
Deletion
Development of the central nervous
system
DNA replication: possible
models
DNA replication: proteins
involved
DNA synthesis and
processing
Duplication
EExon
Frog
Web
Fuzzy
Logic
Gene
Gene
expression
Gene to
protein
Genes
Genetic code
Genetics
Human chromosomes
Molecular
biology Gateway
Mutations
Mutation of chromosomes
Neural Net
(links)
Neuromuscular
adhesion molecules
Neuromuscular
Page
Neuron
Nucleic
acids (links)
Regulatory Protein Coordinating Gene
Expression
Repressor Protein Switching Genes On and
Off
Retrovirus
Retrovirus replication
Retrovirus
resources
Scientific
Method:
What is the "scientific method''?
What is the difference between a fact, a theory and a hypothesis?
If scientific theories keep changing, where is the Truth?
How much fraud is there in science?
Are scientists wearing blinkers?
STAT
Proteins
Synapse
Translocation
Virology:
Emerging & Re-emerging Viruses: An essay
Irish National Virus Reference Laboratory
Selected Topics in General Virology
Sir Albert Sakzewski Virus Research Centre
BioComputing Hypertext Coursebook
Biology (1)
(2)
Cell Biology Course
Cell Biology
Hypertextbook
Classical Electrodynamics (200 p,
downloadable)
Dictionaries (really a lot
of)
Dictionary
(Thesaurus-Translator)
Dictionary
(pronounce, downloadable)
Dictionary of Bioinorganic Chemistry
(terms)
Dictionary of Cell
Biology
Dictionary of Physical Organic Chemistry
(terms)
Dictionary of Stereochemistry
(terms)
Digestive System
Electromagnetic field theory (200 pag book,
pdf)
Electronic textbooks
Physics
(1)
(2)
Physics
encyclopedia
Quantitative
chemical analysis Lab Manual