Biofluorimetry Lab 
Dipartimento di Fisiopatologia Medica
University of Rome 'La Sapienza'
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Biochemistry

 

 

 

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biophysics / physics

(see also our spectroscopy page)

Abbreviations, symbols

Accelerators

Animated Electromagnetism
Animated Physics (interactive esperiments)
Atomic Physics:

Bohr Model of the Atom

Electromagnetic Radiation

Infrared Radiation and Degrees of Freedom

Quantum Numbers and the Periodic Table

Spectral Sensitivity of the Eye

Atomic Structure

Atoms review
Bar-psi-Kpa-atm conversion

Binary phase equilibria (1)(2)
Binary prefixes
Bioelectricity
Bioenergetics (1)(2)

Biomagnetism and Bio-electromagnetism (1)(2)

Biomechanics Yellow Pages

Bionics:

Links (1)(2)

Rebuilding the Body with Bionics

Silicon Cochlea - From Biology to Bionics

Trade Secret of Sticky Spiders Revealed

Two Jointed Robot Arm with Elastic Drives and Active Oscillation Damping

What is Bionics?

Biophysical Chronology

Biophysics (1) (2)

Biophysics Textbook

Cathode and Canal Rays

Chronology
Cloud Chambers

Conformation space & energy function of proteins
Constants (1)
Conversion of Units

Coordinate Systems

Detection Electronics:

Current-to-voltage conversion

Gated integrator

Lock-in amplifier

Oscilloscope: introduction & digital oscilloscope

Pulse counting (photon counting)

Transient recorder

Directories

Electricity:

Action Potential

Cable Model of the Axon

Capacitors and RC Circuits

Circuit Topology

Circuits

Coulomb Force

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Membrane Potentials

Electricity & Magnetism:

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Electromagnetic Oscillations

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Electrostatics

Faraday's Law

Inductance

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Solid State and Semiconductors

Thermionic Emission

Thermoelectricity

Transformers

Voltaic Cells

Electrodynamic (van der Waals) forces

Electromagnetic radiation
Electromagnetic waves and Maxwell's equations

Electron Diffraction

Electronic textbooks

Electromagnetism
Electronics tutorial

Elementary Particles

Encyclopedia of Laser Physics

Endotherm

Energy transduction in membranes

Entropy and the laws of thermodynamics

Exotherm
Famous physicists

Fission and Fusion

Entropy
Fluids:

Blood Velocity and Turbulence

Human Cardiovascular System

Nature of Fluids

Poiseuille's Equation

Pulsatile Flow

Franck-Hertz Experiment

Fuel Cells

Fundamental Particles

Fundamental Physical Constants

Gas-phase equilibria

Glossary of Accelerator Terms

Hydrophobicity scale of amino acids
History (
1) (2)

Infrared Spectra
Infrared Spectra (Introduction to)

Infrared Spectroscopy - Basic
Interactive physics textbook

Interactive simulation & VRML gallery
International System of Units
Introductory Physics Notes

Ion channels and excitability simulations

Laser

Laser Tutorials
Lasers
Laws and rules of physics

Lipid Thermotropic Phase Transitions Database
Magnetism:

Magnetic Fields

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Mass Spectroscopy, Current Loops and Spin

Luminescence

Mathematical Models in Biophysics (PDF)
Mechanics - 1:

Acceleration

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Mechanics - 2:

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Kinematics

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Membrane Biophysics

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Membrane potential  (Nernst) (slides) (Gouy-Chapman equation)

Membrane potential in brain

Membrane Protein Explorer (by hydropathy plot)

Membrane Protein Folding and Stability (Thermodynamics)
Membrane protein-lipid interaction energetics

Molecular biophysics (links)

Molecular Dynamics Simulations of Lipid Bilayers

Molecular Dynamics Simulations of Membranes
Molecular structure calculation (with 3D images)

NMR fundamentals

Nuclear Physics:

Biological Effects of Radiation

Elementary Particles

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Optical tweezers: measuring piconewton forces
Optics & Photonics Resources, References & Tutorials

Optics:

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Particle-Surface Resources on the Internet (180 links!)

Permeation as a diffusion process

Phase diagram web

Phase diagrams (1)(2) (3, glossary of terms)

Phase equilibria basics

Phase equilibria (1)(2)(3)(4)(5)(6)

Plasma physics

Protein-detergent interactions
Photobiology online

Photoelectric Effect

Photons (1)(2)

Photons & Biophotons:

Biophoton emission from the hands (PDF)

Electromagnetic self-field theory: its application to hydrogen atom

Light in our cells

Photon and its energy

Photon chemistry

Planck’s 'Constant'

Spectroscopy of the EM field: a predicted photonic chemistry

Physical Constants (1) (2)
Physical Reference Data (NIST)
Physics (
1) (2)
Physics Calculators
Physics Web

Protein folding - unraveling the mystery

Quantum biology

Quantum biophysics in living organisms

Quantum Mechanical Barrier Penetration

Quantum Mechanics (1)
Quantum Physics
Radioactive decay calculator (1) (2)

Radioactivity

Radionuclide Half-Life Measurements
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(1) (2)
Raman spectra of carbohydrates
Raman spectroscopy of single molecules (SERS)

Range of Alpha Particles

Scattering

SI prefixes & units
Signal conversion: electrical to chemical
Single Molecule Microspectroscopy

Special Relativity

Spectroscopy
Spectrometry
Statistical Mechanics

Statistical Thermodynamics Computational Site

Structural biophysics web resources

Superconductivity

Surface charge

Symbols (1) (2)

Temperature

Temperature conversion calculator

Ternary Phase Diagrams

Thermal Glossary

Thermodynamic Data at 298 K

Thermodynamic data (Cp, entropy, and enthalpy of formation) for over 5000 compounds

Thermodynamic Equilibrium (experiments, Java)
Thermodynamics:

All You need to konw

Body Temperature Regulation

Cellular Metabolism

Chemical Potential Energy

Heat

Photosynthesis and Entropy Generation

Statistical mechanics

Statistical Systems

Thermodynamics of energy transduction in biological membranes
Thermophysical Properties of Fluid Systems

Time measurement

Vapor-liquid equilibria for distillation

Vapor pressure, boiling and freezing temperatures of a solution
Vibration Modes (schemes & AVI files)
Vibrational spectrum of a linear molecule (pdf file)
Waves - 1:

Chaotic Oscillations

Coupled Harmonic Oscillators

Doppler Shift

Forced Oscillations/Resonance

Interference

Music and the Ear

Simple Harmonic Motion

Sound Spectrum/Sources

Speed of Sound

Standing Waves/Resonance

Superposition : Fourier Principles/Complex Waves

Travelling Waves

Vibrational Modes

Waves - 2:

Kinematics

Superposition

Boundary Conditions

The Doppler Effect

Physics of Hearing

Reflection and Refraction

Diffraction

Matter Waves

Wavenumber Tables for Calibration of Infrared Spectrometers

What is biophysics?
X-ray and Gamma-ray Data
X-ray diffraction
X-ray emission lines
X-ray interactions with matter
X-ray www server

X-Rays

Zeeman Effect


 

chemistry / physical chemistry

see also the new page

Acid-Base equilibria

Agricultural chemistry (1) (2)
Analytical Chemistry & Instrumentation
Atomic orbitals (1) (2)
Atomic Spectra Database (NIST)
Atomic Spectroscopic Data
Atomic Structure  (1) (2)
Basic Math concepts

Biochemistry/Chemistry
Boiling point

Bond Energy
Chemical bonding
Chemical bonds (peptide bond) (1) (2)
Chemical bonds and groups (1) (2)
Chemical bonds and molecular structures
Chemical bonds modeled with a mathematical function
Chemical elements sorted by:

Atomic Radius

Boiling Point

Covanlent Radius

Cross Section

Crystal Structure

Density

Electrical Conductivity

Electronegativity (Pauling)

Heat of Vaporization

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Name (English)

Series

Symbol

Thermal Conductivity

Year of Discovery

Chemical engineering

Chemical kinetics

Chemical sensors
Chemistry & Environmental Dictionary

Chemistry Calculator
Chemistry Databases (1) (2)
Chemical Forums

Chemistry Internet Index
Chemistry Lab General Procedures
Chemistry resources (1) (2)
Chemistry sites (1) (2)
Clinical chemistry sites

Composition of matter
Computational chemistry

Constants and Equations
Conversion of Units
Cosmochemistry

Covalent and ionic bond
Crystallographic data center (Cambridge)
Education links

Electroanalytical Chemistry
Electrochemistry
Electronic Energy Levels Searches
Electronic structure of molecules
Environmental chemistry (1) (2)

Equation balancer
Equations, Formulas & Stoichiometry
Equilibrium  (1) (2) (3)
Fourier Transform
Fuel chemistry (1) (2)

Gases (molecular equilibrium)
Gaussian distribution (pdf file)
Geochemistry Sites

Infrared Spectra (Introduction to)
Ionization Data
IUPAC (Nomenclatures/Recommendations)
Mass Spectral Database  (1) (2) (3) (4)
Matrices (for physical chemistry) pdf file
Maxwell-Boltzman distribution (pdf file)
Medicinal chemistry

Molarity, Molality and Normality

Molecular Mass calculator
Molecular orbitals
Nuclear & Radiochemistry

Organic chemistry (introduction to)

Organic nomenclature
Organic Question Bank

Organometallic Thermochemistry Database
Periodic law
Periodic Table (huge web repository)
pH calculation & Protons
Photochemistry

Physical Chemistry
Sample Preparation & Microwave Chemistry
SI units
Solid state chemistry (1) (2)

Solutions (1) (2)
Photochemistry Database

Radiochemistry History
Spectra integrated database for organic compounds
Spectra libraries
Standard Reduction Potentials (1) (2) (3)
Surface analysis

Surface Chemistry
Surface tension
Thermochemistry (1) (2) (3)

Thermodynamics and Solution Behavior of Macromolecules

Thermodynamics
Vapor pressure (1) (2)
Vapor pressure Data (organic compounds)

Water chemical properties (part 1 – part 2)
Water and Ice
Weak non-covalent chemical bonds (part 1 – part  2)
 

biochemistry

Acetyl CoA production

Amino Acids:

 area

biosynthesis

figures (3D)

formulas

pKa

metabolism (1) (2)

pI

plants metabolism

properties (1) (2) (3)

reactions

volume

Amino Acid Repository (with biophysical properties)

Amino Acid Atlas of Side-Chain and Main-Chain Hydrogen Bonding

Amino acids in proteins (part 1 – part 2)

Amino Acids Hydrophobicity Table (1) (2)

Antibodies

Antibody molecule

ATP

ATP and biological energy

ATP receptors

ATPases

Biochemistry resources

Biological Macromolecule Crystallization Database

Bonding & Protein structure

cAMP

Calcium ATPase modulators

Calcium channel modulators

Carbohydrate metabolism

Catalase

Cellular Respiration Overview

Chemiosmotic gradient

Chemokine Nomenclature

Chemokines

Chloride channel modulators

Chaperonin Home Page

Citric Acid Cycle

Collagen & Elastin

Cytochrome P450 Family

Cytokine Mini-Reviews

Cytokines

Cytric acid cycle (part 1 – part 2)

Deoxyribonuclease I

Eicosanoids (1) (2)

Electron transport pathways & inhibition

Enzyme biochemistry

Enzyme inhibitors

Enzyme kinetics (1)(2)(3)

Enzyme nomenclature

Erythropoietin

Excitatory Amino Acid transporters inhibitors

Fatty acid (also synthesis and metabolism)

Fatty acids and other lipids (part 1 – part 2)

Fibronectin

Free energy

Glycolysis

Glycolysis (part 1 - part 2) (3) (4)

Heregulin

Hormones (scheme list and effects)

Hydrophobicity (Chou Fasman)

Immunoglobulin structure

Inhibin Family

Interleukins

Kinesin Home Pages (1) (2)

Krebs cycle (1) (2)

Lectins

Lipid metabolism

Matrix Metalloproteinases (MMPs)

Membrane lipids

Membrane Protein structure prediction

Membrane proteins (functions)

Metabolic Pathways in Biochemistry

Metabolic Plant Physiology

Metalloproteins

Miosin & Actin models

Muscle biochemistry

Muscle energetics

Neurotrophic Factors  (1)(2)

Nitric oxide donors/precursors

Nitric oxide metabolism

Nomenclature and Symbolism for Amino Acids and Peptides

Nucleic acid binding proteins (PDB files)

Nucleic acid sequence databases

Nucleotide

Nucleotides (part 1- part 2)

Oxidative phosphorilation (1) (2)

Peptide bond

Photosynthesis

Potassiun channel modulators

Protease Inhibitors

Protease Synthetic Substrates

Proteases

Protein Data Bank (PDB)

Protein sequence databases

Protein Side-Chain Interactions

Protein structure

Protein Structure and Behaviour: principles

Protein synthesis

Proteins (PDB)

Proteins architecture

Pyruvate anaerobic breakdown

Quaternary structure of proteins

RNA

mRNA

Secondary structure of proteins

Sodium channel modulators

Sugars in cells (part 1 – part 2)

Tertiary structure of proteins

Transport (active & passive)

Urea metabolism

 

cell biology

Actin (PPT slides)

Actin

Actin Filaments

Action Potential
Action potential propagation
Activin / Inhibin

Adaptin
Adhesion Molecules (
1) (2)
(3)
Angiogenin

Annexin V
Apoptosis (1) (2)
Apoptosis Interest Group at NIH
Autosome

Calcium Buffering (PDF)

Calcium Signalling. A tale for all seasons (PNAS, 2002 - PDF)
Cell membrane

Cell membrane (drawing)
Cell cycle (scheme diagram)
Cell Organelles
Cell signalling pathway finder
Cells
Cellular & Molecular Biology
Cellular energy metabolism (scheme)

Celluar Respiration

Cellular Respiration Overview

Centriole

Centrosome

Cilia & Flagella

Clathrin

Contraction regulatory proteins
Cytoskeletal filaments

Cytskeletal system
Cytoskeleton
Developmental mechanisms

Epithelia and Junctional complexes

Excitability

Exocytosis
Gametogenesis
GFP fluorescence (molecular structure)

Golgi complex
Green Fluorescent Proteins
Glial Cell Line-derived Neurotrophic Factor (GDNF)

Insertion of proteins into membranes (PPT slides)

Intermediate filaments (PPT slides)
Intercellular Adhesion Molecule-3/CD50 (ICAM-3)

Intermediate filaments

Internalization
Ion channels links

Ionic currents in cells

Intracellular membranes & Cytosol
Ion Channels, Transmitters, Receptors & Disease

Integrins

Junctional Specializations

Kinesin

Lysososmes
Macrophage Stimulating Protein (MSP)
Meiosis (
1) (2)

Membrane Channels genes and gene products

Membrane cholesterol

Membrane fluidity

Membrane glycolipids
Membrane lipids

Membrane phospholipids
Membrane potential (see also in Biophysics & Physics in this page)

Membrane Properties Resources

Membrane structure: freeze-fracture

Membrane structure and function

Membrane studies by cytochemistry

Membranes (PPT slides)

Microtubule Associated Proteins

Microtubules

Microtubules and Cilia (PPT slides)

Microvilli

Mitochondria

Mitochondrial Architecture (PPT slides)

Mitosis
Mitosis labelled diagram
Mitosis & Meiosis (comparison)

Muscle physiology (1) (2)

Myosin

Nuclear Pores

Nucleolar Structure And Function
Nucleosome

Nucleus (
1) (2)

Patching And Capping

Peroxisomes

Protein synthesis and sorting

Receptor Mediated Endocytosis (PPT slides)

Respiration in cells
Ribosome

Rough Endoplasmic Reticulum

Secretion by electrochemical methods (PDF)

Smooth endoplamis reticulum

Smooth Muscle: Histology and Function

Sorting signals and patches (PPT slides)
Table of Standard Genetic Code

Types of neurons

Voltage gated K+ Channels (PDF)

Voltage gated ion channels:

Voltage-gated sodium channels
Voltage-gated calcium channels
Potassium channels
Cyclic nucleotide-modulated channels
Transient receptor potential channels


 

receptors / signal transduction

Acetylcholine & ACh Receptors

Acetylcholine Receptor, Muscarinic (1) (2) (3) (4) (5)

Acetylcholine receptor modulators

Adenylyl/guanylyl cyclase modulators

Adrenoceptor pharmacology (PDF)

Aryl hydrocarbon receptor (1) (2)

Aryl hydrocarbon receptor signaling (PDF)

Aryl hydrocarbon receptor-mediated cell cycle control

Binding site of a protein

Cannabionoid receptor signaling (PDF)

Cannabinoid receptors (1) (2)

Competitive binding

Cyclic nucleotides

Cytokine receptors (1) (2)

Cytokine Signaling Pathway Database

Cytokines Web

Dopamine receptors (1,PDF) (2) (3,PDF)

Eph Receptors & Ligands (1) (2)

Fitting Models to Biological Data using Linear and Nonlinear Regression

G protein coupled receptors (1) (2)

G proteins (1) (2)

Gaba Receptors (1) (2, with animations)

Glutamate Receptors

Histamine receptors

Imidazoline Receptors

Inactivation of neurotransmitter at chemical synapses

Inhibitory Neurotransmission

Inositides & Calcium

Ion channels

IUPHAR Receptor List

Kinase signalling cascade Genes

Law of mass action

Levels of organization in the nervous system

Ligand Gated Ion Channel database

Map Kinase Pathways (1) (2 PDF) (3) (4 PDF) (5) (6)

Mechanoreceptors

Melatonin receptors (PDF)

Metabotropic Glutamate Receptors (PDF)

Nerve impulse (part 1) (part 2)

Nervous System Organization

Neural Basis of Complex Behavior

Neurotransmission Biochemistry

Neurotransmitters/neuromodulators

Neurotransmitter systems

Neurotransmitter receptors

Neurotransmitters families

Nicotinic neuronal receptors (PDF)

Nuclear Hormone Receptors

Nuclear Receptor Resource

Nucleotide and Nucleoside Receptors (PDF)

Odor Molecules DataBase

Olfactory Bulb Odor Map

Olfactory Receptor DataBase

Opioid receptors (PDF)

PhosphoBase - A database of phosphorylation sites

Propagation of the Action Potential

Protein Kinases

Protein kinases activators inhibitors

Protein Kinase Resource

Receptor Binding: Basic Principles and Techniques (PDF)

Receptor Database:                                                          

5-Hydroxytryptamine receptors
Acetylcholine receptors (muscarinic)
Adenosine receptors
Adrenoceptors
Angiotensin receptors
Cannabinoid receptors
Chemokine receptors
Cholecystokinin receptors
Dopamine receptors
Endothelin receptors
GABAB receptors
Glucagon receptor family
Histamine receptors
Leukotriene receptors
Melanocortin receptor family
Melatonin receptors
Metabotropic glutamate receptors
Neuromedin U Receptors
Neuropeptide Y receptor family
Opioid receptors
P2X receptors
P2Y receptors
Prostanoid receptors
Somatostatin receptors
Urotensin receptors
VIP and PACAP receptors

Receptor Families

Receptors list and properties

Receptor Mediated Endocytosis

Receptor Tyrosine Kinases database

Reflexes and pattern generation

Resting membrane potential

Second messengers

Sensory Receptors and Phototransduction in Rods
 Serotonin Receptors (PDF)

Signal transduction (1) (2)

Small GTP binding proteins

 Steroid hormone receptors

Synaptic Transmission and Neural Integration

Synaptic transmission with animations

Tachykinine receptors (PDF)

Terms & symbols in receptor pharmacology (PDF)

TGFbeta signaling

Theory And Practice Of Receptor Characterization And Drug Analysis

Tyrosine phosphotation

Voltage gated ion channels:                                

Voltage-gated sodium channels

Voltage-gated calcium channels
Potassium channels
Cyclic nucleotide-modulated channels
Transient receptor potential channels

 

 

 

 

data analysis

see also the new page

Accuracy & Precision
Biocomputing (links)
Bioinformatics & Computational Biology
Coordinate Systems

Constants, Units & Uncertainty
Crystallography

Data acquisition (Introduction)
Data Analysis/Modeling
Data rejection
Gaussian distribution (pdf file)

Fitting Models to Biological Data using Linear and Nonlinear Regression (pdf)
Graphical Data Analysis
Idealization, Approximation and Precision

Lin<>Log conversion
Linear and non-linear compartmental models
Mathematical background
Mathematical Constants
Mathematics (links)
Mathematics of NMR
Mean versus median (pdf file)
Non-linear regression

Numerical Solution of Second Order Differential Equations (pdf file)
Problem Solving

Propagation of error (pdf file)

Receptor Binding: Basic Principles and Techniques

Statistical formulas

Statistics
Uncertainty in measurements  (NIST guidelines, 1994 ed, pdf)

 

software

Biochemistry

Biocomputing & Bioinformatics (1) (2)

Biology (comprehensive)

Chemistry (1) (2) (3)

Chime

Chromatography

Crystallography

Data Acquisition

Firefox (will subst. CHIME)

Inventory and Maintenance

LabView

Mass Spectrometry

Mathematics

Membrane Protein Explorer (by hydropathy plot)

Molecular Biology

Molecular Drawing and Modeling

MolScript

Molecular Modeling & Graphics

Peptides:

Antigenic Peptide Predictions

Helical Wheel (peptide sequence as a helical wheel)

Hydrophobicity Plotter (hydrophillic and hydrophobic regions)

Isoelectric (charge as a function of pH)

Isotopident (isotopic distribution)

Moment (helical hydrophobicity)

PAWS (interpretation of mass) spectra

PepSeq (peptide sequencing techniques)

Peptide Builder Lite (text representations for peptides and proteins)

Peptide Companion (HPLC behavior of peptides, enzymatic or chemical degradation, conformation predictions...)

PeptideMap (peptide map as a function of proteolytic digestion)

Peptide Property Calculator (molecular weight, titration curve,  iso-electric point,  hydrophilicity/hydrophobicity)

POVRay

PDB Viewer

RasMol

Raster 3D

ViewerPro

Other Packages (1)(2)

 

other

Adenovirus
Artificial Intelligence
Atomic force microscopy (has its own page)
Behavior
Biochemnet
Bone Morphogenetic Proteins (PDF)
BOOKS on Science and Nature (from Amazon)
Brain (comprehensive introduction)
Carcinogen potency database
Central Dogma of Molecular Biology
Crossing-over
Deletion
Development of the central nervous system
DNA replication: possible models
DNA replication: proteins involved
DNA synthesis and processing
Duplication
EExon
Frog Web
Fuzzy Logic
Gene
Gene expression
Gene to protein
Genes
Genetic code
Genetics
Human chromosomes
Immunology links (1) (2) (3) (4)
Immunology & Biotechnology
Insertion
Intron
Learning
Memory
Microbiology / Virology

Molecular biology Gateway
Mutations
Mutation of chromosomes
Neural Net (links)

Neuroscience Net:

Molecular neurobiology

Neuroanatomy

Neuropharmacology

Neurophysiology

Neuropsychiatry

Theoretical neuroscience

Neuromuscular adhesion molecules
Neuromuscular Page
Neuron
Nucleic acids (links)
Regulatory Protein Coordinating Gene Expression
Repressor Protein Switching Genes On and Off
Retrovirus
Retrovirus replication

Retrovirus resources
Scientific Method:

What is the "scientific method''?

What is the difference between a fact, a theory and a hypothesis?

Truth and proof in science.

If scientific theories keep changing, where is the Truth?

What is Ockham's Razor?

How much fraud is there in science?

Are scientists wearing blinkers?

Why should we worry?

STAT Proteins
Synapse
Translocation
Virology
:

Virology Resources

All the Virology on the WWW

Ebola Virus Information

Clinical Virology

Emerging & Re-emerging Viruses: An essay

HIV Sequence Database

Irish National Virus Reference Laboratory

Plant Viruses Online

Selected Topics in General Virology

Sir Albert Sakzewski Virus Research Centre

The Big Picture Book of virus

Virus Ultra Structure

Virus Links

Virus Databases on-line


Viruses
 

 

 

Hypertextbooks

Biocatalysis & Biodegradation

BioComputing Hypertext Coursebook
Biology (1) (2)

Cell Biology Course
Cell Biology Hypertextbook
Classical Electrodynamics (200 p, downloadable)
Dictionaries (really a lot of)
Dictionary (Thesaurus-Translator)
Dictionary (pronounce, downloadable)
Dictionary of Bioinorganic Chemistry (terms)
Dictionary of Cell Biology
Dictionary of Physical Organic Chemistry (terms)
Dictionary of Stereochemistry (terms)
Digestive System

Electromagnetic field theory (200 pag book, pdf)
Electronic textbooks

Encyclopedia of Laser Physics

Endocrine System

Glossary
Glycolysis and the Krebs Cycle

Interactive physics textbook

Physics (1) (2)
Physics encyclopedia

Quantitative chemical analysis Lab Manual
 

Tutorials & Education - Protocols & Methods

17 b-HSD activity analysis

Acids and Bases: strengths of common commercial -

Actin-Myosin interaction

Adhesion of cells under static conditions (measurement of)

Adhesion of cells under well-defined wall shear stress (visualization of)

Affinity chromatography

Agarose gels (also for DNA analysis)

Agarose gel electrophoresis (basic method) (2)

Alkaline Phosphatase And Phospholipase C Assays

Amphibian Embryology Tutorial

Analytical Utracentrifugation

Annexin V Staining Protocol

Antibody conjugation to FITC or Biotin

Antibody conjugation to HRP
Antibody Product Guide (PDF file, 505K)
Antibody Production (Monoclonal & Polyclonal)

Antibody purification (1) (2)

Antibody purification by affinity binding to Proteins Bound to Nitrocellulose

Antibody Reference Guide, May 2003 (891K)
Antigen Retrieval in slices
Apoptosis and Proliferation Methods

Apoptosis activity evaluation by qualitative DNA laddering assay and DAPI staining.

Apoptosis induction

Apoptosis Miniassay

Apoptosis TUNEL assay (Paraffin Sections)
Aseptic techniques (1) (2) (3)

Autoradiography

Autoradiography and fluorography

Autoradiography and Intensifying Screens

Azide Removal by Dialysis

BAC DNA Fingerprint Analysis

Bench Top Radioactive Work Protocol

Biological Procedures Online

Bioassay: Chemotaxis
 Bioassay: NR6R-3T3 Cells

 Bioassay: Proliferation of HUVECs
 Bioassay: TF-1 Cells
 Bioassay: Wnt-3a From Brains to Bones
Biochemical Energetics
Biochemical Techniques  - see also specific topics
Biochemistry & Chemistry for biology

Bioenergetics

Bioinformatics (Online Lectures)

Biophysics textbook online
Bioprocess technology
Biosafety

Biosynthetic labeling

Biotechnology
Blotting Protocols (see Western Blotting)
Buffers and Media (1 - 2  - 3 - 4 - 5 - 6)
Capillary electrophoresis

Cell Adhesion Under Static Conditions

Cell Adherence Assay
Cell Biology: Advanced Microscopy (Index)
Cell Biology Media, Solutions and Stains (also fluorescent)
Cell Biology Techniques

Cell counting with an hemacytometer (1 - 2 - 3 - 4)

Cell counting with Coulter Counter

Cell culture: basics

Cell culture: Plastic Dishes

Cell culture: medium, trypsin volume and cell inoculation density

Cell culture: media & formulations (1 - 2)

 Cell Culture Protocols

Cell Culture: Working media, Trypsin volumes and cell density

Cell cytotoxicity (neutral red method)

Cell cytotoxicity (51Cr method)

Cell Death Staining with FDA and Propidium iodide

Cells Dissociation from Culture Vessels

Cells Dissociation from Primary Tissue

Cell Growth & Cytotoxicity

Cell Growth Dynamics (Eukaryotes)

Cell isolation techniques

Cell isolation theory
Cell membrane

Cell membrane model: history

Cell preparation & isolation

Cell proliferation assay with MTT (1, PDF) (2, PDF)

Cell proliferation assay with 3H-Thymidine
Cell separation columns

Cell Storage
Cell Lines Inventories

Cell Migration Assay (under-agarose method)
Cell Preparation Manual

Cell Trypsinization (1 - 2)

Cell vitality evaluation (1 - 2, trypan blue excl. - 3)
Centrifugation (1) (2) (3)

Centrifugation: rpm-gravity relationship

Centrosome Preparation

Chelates and Chelating Agents
Chemical Abstract Services
Chemistry education
Chemistry tutorials

Chemoreception

Chemotaxis (AVI vdeo)

Chemotaxis Assay

Chromatography
Chromatography Equations

Chromatography links

Chromatography technical tips

Circular Dichroism Specroscopy

Cloning from adult vertebrate cells
Collagens
Colloidal gold conjugation

Colloidal Gold Probes (Preparation of)
Colloidal gold enhancement with silver

Colorimetric assays basics

Colorimetric ELISA/Assay Kit Substrates
Colors of Gemstones
Comet assay

 Commonly Used Fluorochromes in Flow Cytometry

Compound Naming Links

Coupling Peptides To Resin For Affinity Purification

Course/Tutorial on Cell Biology

Covalent labeling of biomolecules
Coverslip coating (polylysine)

Colorimetric ELISA/Assay Kit Substrates

Cryoconservation of animal cells
Cryopreservation and Storage of Cell Lines

Culture hoods: Formaldehyde Treatment

35S-Cysteine Incorporation into Cellular Protein

Cytokine Multiplexing Kits Product Guide (PDF file, 64K)
Cytoskeleton fixation and immunofluorescence

Decontamination of cells from the yeast

Detergents for membrane studies
DMEM composition

DNA Agarose Electrophoresis

DNA and RNA UV Spectrophotometric Analysis

DNA assay by Spot Fluorescence (PDF)

DNA concentration assay by fluorescent dye

DNA concentration assay by UV spectrophotometry

DNA Fragmentation Assays for Apoptosis
DNA Manipulation Techniques

DNA Microarray:

DNA Quantification by TCA Precipitation

DNA Sequencing

Dot Slot Blotting

DNA Transformation/Library Preparation
Educational Physics Applets
Enhanced ChemiLuminescence
Electromagnetism tutorial (JAVA)
Electron Microscopy guidebook
Electronic circuit components

Electronics

Electrophoresis

Electrophysiology
ELISA

ELISA Development Guide (PDF file, 152K)

ELISA Product Guide (PDF file, 160K)

ELISA Reference Guide (PDF file, 672K)

ELISA Troubleshooting Guide (PDF file, 66K)

Eluotropic Strength of Solvents on Various Sorbents
Embedding in plastics

Embedding in Resins for Immunocytochemistry
Embryo Manipulation

Ethanol precipitation of DNA
Ethidium Bromide Decontamination (1) (2) (3) (4)

Experimental Methods (concepts in experiments)
FACS Standard Protocol

FAK Autophosphorylation Assay

Fats and Oils
FISH
FISH - dyes
FISH - centromeric multiplex
FISH guide
FISH - multicolor
FISH - slide preparation
FISH - telomeric multiplex

Fitting Models to Biological Data using Linear and Nonlinear Regression

Flow Cell Assays with Microtubules

Flow cytometry

Fluorescence Imaging Techniques (pdf-ppt)

Fluorescence Techniques (pdf)

Fluorescent Assay for the Simultaneous Identification of Apoptotic and Necrotic Cells

Fluorescein Labeling of proteins (1) (2)
Fluorokine MAP Cytokine Multiplex Assay (PDF file, 897K)

Formaldehyde gel electrophoresis and non-radioactive northern blotting

Formaldehyde Uses and Misuses
Fourier synthesis (Java with sound)

Fourier Transform

Freezer and Cell Lines personal database (Access based 
Freezing cells for storagein liquid nitrogen
  and  retrieving cells
Freezing & Splitting cells

Freezing and Thawing Cells (1 - 2 3 - 4 - 5 - 6)

Frozen sections / Cytological preparations

Freezing cells in liquid N2 for storage (Reviving)

Gas Chromatography - Introductory Theory

Gel Shift with Glutaraldehyde
General relativity
Genetics tutorial (Morgan's)

Genomic DNA preparation from bacteria
Getting started and staying organized at the bench

GFP fluorescence (molecular structure)
Glutathione micro-assay

Gram-staining Procedure
Green Fluorescent Protein Home Page

Green fluorescent protein-tagged receptors in living cells (AVI file)
Green Fluorescent Proteins

3H-Thymidine Uptake by Cultured Cells